soliasia.blogg.se - Caret confusion matrix

19 Feature Selection using Univariate Filters.

18.1 Models with Built-In Feature Selection.

16.6 Neural Networks with a Principal Component Step.

16.2 Partial Least Squares Discriminant Analysis.

16.1 Yet Another k-Nearest Neighbor Function.

13.9 Illustrative Example 6: Offsets in Generalized Linear Models.

13.8 Illustrative Example 5: Optimizing probability thresholds for class imbalances.

13.7 Illustrative Example 4: PLS Feature Extraction Pre-Processing.

13.6 Illustrative Example 3: Nonstandard Formulas.

13.5 Illustrative Example 2: Something More Complicated - LogitBoost.

13.2 Illustrative Example 1: SVMs with Laplacian Kernels.

12.1.2 Using additional data to measure performance.

12.1.1 More versatile tools for preprocessing data.

11.4 Using Custom Subsampling Techniques.

7.0.27 Multivariate Adaptive Regression Splines.

5.9 Fitting Models Without Parameter Tuning.

5.8 Exploring and Comparing Resampling Distributions.

5.7 Extracting Predictions and Class Probabilities.

5.1 Model Training and Parameter Tuning.

4.4 Simple Splitting with Important Groups.

4.1 Simple Splitting Based on the Outcome.

3.2 Zero- and Near Zero-Variance Predictors.

Reduction.," Genetic Epidemiology, vol 4, 306. Modeling in imbalanced datasets using multifactor dimensionality (2008) "A balanced accuracy function for epistasis

(1994) "Diagnostic tests 2: predictive values," Specificity", British Medical Journal, vol 308, 1552.Īltman, D.G., Bland, J.M. (1994) "Diagnostic tests 1: sensitivity and (2008), "Building predictive models in R using theĬaret package, " Journal of Statistical Software,Īltman, D.G., Bland, J.M. Want, you can simply supply the table to this function. This function is called by confusion_matrix, but if this is all you Sensitivity: True Positive Rate, Recall, Hit Rate, Powerįalse Negative Rate: Miss Rate, Type II error rate, βįalse Positive Rate: Fallout, Type I error rate, α See the references for discussions of the first five formulas.Ībbreviations: Positive Predictive Value: PPVĭifferent names are used for the same statistics. $$D' = qnorm(Sensitivity) - qnorm(1 - Specificity)$$ $$False Negative Rate = 1 - Sensitivity$$ $$False Positive Rate = 1 - Specificity$$ $$False Omission Rate = 1 - Negative Predictive Value$$ $$False Discovery Rate = 1 - Positive Predictive Value$$ $$F1 = harmonic mean of precision and recall = (1+beta^2)*precision*recall/((beta^2 * precision)+recall)$$ $$Balanced Accuracy = (sensitivity+specificity)/2$$

$$Negative Predictive Value = (specificity * (1-prevalence))/(((1-sensitivity)*prevalence) + ((specificity)*(1-prevalence)))$$ $$Detection Rate = A/(A+B+C+D)$$ $$Positive Predictive Value = (sensitivity * prevalence)/((sensitivity*prevalence) + ((1-specificity)*(1-prevalence)))$$ This is called by confusion_matrix, but if this is all you Used within confusion_matrix to calculate various confusion matrix > 2 classes, these statistics are provided for each class. ) Arguments tabbleĪ tibble with (at present) columns for sensitivity, specificity, PPV, NPV, F1 score, detection rate, detection prevalence, balanced accuracy, FDR, FOR, FPR, FNR. calc_stats( tabble, prevalence = NULL, positive. Given a frequency table of predictions versus target values,Ĭalculate numerous statistics of interest.